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1.
Eur J Med Chem ; 219: 113419, 2021 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-33845233

RESUMO

The pathogenesis of Alzheimer's disease (AD) has been associated with dysregulation of histone deacetylases (HDACs). Previously, acridine-based HDAC inhibitors have shown potential in ameliorating HDAC activity and enhancing neurite outgrowth. In this study, the acridine ring was modified using various phenothiazine derivatives. Several resulting compounds exhibited potent enzyme-inhibiting activity towards class II HDACs when compared to the clinically approved HDAC inhibitor SAHA. Compound 4f demonstrated the highest class II HDAC inhibition (IC50 = 4.6-600 nM), as well as promotion of neurite outgrowth. Importantly, compound 4f displayed no cytotoxicity against neuron cells. Compound 4f was further evaluated for cellular effects. Altogether, these findings show a potential strategy in HDAC inhibition for treatment of the neurological disease.


Assuntos
Inibidores de Histona Desacetilases/síntese química , Histona Desacetilases/química , Ácidos Hidroxâmicos/química , Fenotiazinas/química , Acetilação/efeitos dos fármacos , Doença de Alzheimer/tratamento farmacológico , Doença de Alzheimer/patologia , Sítios de Ligação , Barreira Hematoencefálica/efeitos dos fármacos , Barreira Hematoencefálica/metabolismo , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos dos fármacos , Desenho de Fármacos , Inibidores de Histona Desacetilases/metabolismo , Inibidores de Histona Desacetilases/farmacologia , Inibidores de Histona Desacetilases/uso terapêutico , Histona Desacetilases/genética , Histona Desacetilases/metabolismo , Histonas/metabolismo , Humanos , Simulação de Acoplamento Molecular , Neuritos/efeitos dos fármacos , Neuritos/fisiologia , Fármacos Neuroprotetores/síntese química , Fármacos Neuroprotetores/metabolismo , Fármacos Neuroprotetores/farmacologia , Fármacos Neuroprotetores/uso terapêutico , Estresse Oxidativo/efeitos dos fármacos , Fenotiazinas/metabolismo , Fenotiazinas/farmacologia , Fenotiazinas/uso terapêutico , Relação Estrutura-Atividade , Tubulina (Proteína)/metabolismo
2.
J Venom Anim Toxins Incl Trop Dis ; 26: e20200056, 2020 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-33281887

RESUMO

BACKGROUND: The venom of bamboo vipers (Trimeresurus stejnegeri - TS), commonly found in Taiwan, contains deadly hemotoxins that cause severe envenomation. Equine-derived antivenom is a specific treatment against snakebites, but its production costs are high and there are some inevitable side effects. The aim of the present work is to help in the development of an affordable and more endurable therapeutic strategy for snakebites. METHODS: T. stejnegeri venom proteins were inactivated by glutaraldehyde in order to immunize hens for polyclonal immunoglobulin (IgY) antibodies production. After IgY binding assays, two antibody libraries were constructed expressing single-chain variable fragment (scFv) antibodies joined by the short or long linker for use in phage display antibody technology. Four rounds of biopanning were carried out. The selected scFv antibodies were then further tested for their binding activities and neutralization assays to TS proteins. RESULTS: Purified IgY from egg yolk showed the specific binding ability to TS proteins. The dimensions of these two libraries contain 2.4 × 107 and 6.8 × 107 antibody clones, respectively. An increase in the titers of eluted phage indicated anti-TS clones remarkably enriched after 2nd panning. The analysis based on the nucleotide sequences of selected scFv clones indicated that seven groups of short linkers and four groups of long linkers were identified. The recombinant scFvs showed significant reactivity to TS venom proteins and a cross-reaction to Trimeresurus mucrosquamatus venom proteins. In in vivo studies, the data demonstrated that anti-TS IgY provided 100% protective effects while combined scFvs augmented partial survival time of mice injected with a lethal amount of TS proteins. CONCLUSION: Chickens were excellent hosts for the production of neutralization antibodies at low cost. Phage display technology is available for generation of monoclonal antibodies against snake venom proteins. These antibodies could be applied in the development of diagnostic kits or as an alternative for snakebite envenomation treatment in the near future.

3.
J. venom. anim. toxins incl. trop. dis ; 26: e20200056, 2020. tab, graf
Artigo em Inglês | LILACS, VETINDEX | ID: biblio-1135145

RESUMO

The venom of bamboo vipers (Trimeresurus stejnegeri - TS), commonly found in Taiwan, contains deadly hemotoxins that cause severe envenomation. Equine-derived antivenom is a specific treatment against snakebites, but its production costs are high and there are some inevitable side effects. The aim of the present work is to help in the development of an affordable and more endurable therapeutic strategy for snakebites. Methods: T. stejnegeri venom proteins were inactivated by glutaraldehyde in order to immunize hens for polyclonal immunoglobulin (IgY) antibodies production. After IgY binding assays, two antibody libraries were constructed expressing single-chain variable fragment (scFv) antibodies joined by the short or long linker for use in phage display antibody technology. Four rounds of biopanning were carried out. The selected scFv antibodies were then further tested for their binding activities and neutralization assays to TS proteins. Results: Purified IgY from egg yolk showed the specific binding ability to TS proteins. The dimensions of these two libraries contain 2.4 × 107 and 6.8 × 107 antibody clones, respectively. An increase in the titers of eluted phage indicated anti-TS clones remarkably enriched after 2nd panning. The analysis based on the nucleotide sequences of selected scFv clones indicated that seven groups of short linkers and four groups of long linkers were identified. The recombinant scFvs showed significant reactivity to TS venom proteins and a cross-reaction to Trimeresurus mucrosquamatus venom proteins. In in vivo studies, the data demonstrated that anti-TS IgY provided 100% protective effects while combined scFvs augmented partial survival time of mice injected with a lethal amount of TS proteins. Conclusion: Chickens were excellent hosts for the production of neutralization antibodies at low cost. Phage display technology is available for generation of monoclonal antibodies against snake venom proteins. These antibodies could be applied in the development of diagnostic kits or as an alternative for snakebite envenomation treatment in the near future.(AU)


Assuntos
Animais , Venenos de Serpentes , Antivenenos , Galinhas , Trimeresurus , Anticorpos , Bacteriófagos
4.
Chembiochem ; 20(2): 295-307, 2019 01 18.
Artigo em Inglês | MEDLINE | ID: mdl-30609216

RESUMO

Endoglucanase CtCel9Q is one of the enzyme components of the cellulosome, which is an active cellulase system in the thermophile Clostridium thermocellum. The precursor form of CtCel9Q comprises a signal peptide, a glycoside hydrolase family 9 catalytic domain, a type 3c carbohydrate-binding module (CBM), and a type I dockerin domain. Here, we report the crystal structures of C-terminally truncated CtCel9Q (CtCel9QΔc) complexed with Tris, Tris+cellobiose, cellobiose+cellotriose, cellotriose, and cellotetraose at resolutions of 1.50, 1.70, 2.05, 2.05 and 1.75 Å, respectively. CtCel9QΔc forms a V-shaped homodimer through residues Lys529-Glu542 on the type 3c CBM, which pairs two ß-strands (ß4 and ß5 of the CBM). In addition, a disulfide bond was formed between the two Cys535 residues of the protein monomers in the asymmetric unit. The structures allow the identification of four minus (-) subsites and two plus (+) subsites; this is important for further understanding the structural basis of cellulose binding and hydrolysis. In the oligosaccharide-free and cellobiose-bound CtCel9QΔc structures, a Tris molecule was found to be bound to three catalytic residues of CtCel9Q and occupied subsite -1 of the CtCel9Q active-site cleft. Moreover, the enzyme activity assay in the presence of 100 mm Tris showed that the Tris almost completely suppressed CtCel9Q hydrolase activity.


Assuntos
Celulase/química , Celulose/análogos & derivados , Clostridium thermocellum/enzimologia , Dextrinas/química , Oligossacarídeos/química , Celulase/metabolismo , Celulose/química , Cristalografia por Raios X , Concentração de Íons de Hidrogênio , Modelos Moleculares , Temperatura
6.
Toxins (Basel) ; 10(10)2018 09 21.
Artigo em Inglês | MEDLINE | ID: mdl-30248928

RESUMO

Traditional, horse-derived antivenin is currently the most efficient treatment against snake bites. However, it is costly and has unpredictable side effects. Thus, alternative, cost-effective strategies for producing antivenin are needed. In this study, we immunized hens with inactivated NNA venom proteins from the cobra Naja naja atra (NNA). Purified yolk IgY antibodies showed specific anti-NNA binding activity comparable to that of the equine-derived antivenin. We used phage display technology to generate two antibody libraries containing 9.0 × 108 and 8.4 × 108 clones with a short or long linker, respectively. The phage ELISA indicated that anti-NNA clones displaying single-chain variable fragments (scFv) were significantly enriched after biopanning. The nucleotide sequences of the light and heavy chain genes of 30 monoclonal scFv antibodies were determined and classified into six groups with the short linker and nine groups with the long linker. These scFv clones specifically bound to NNA proteins but not to venom proteins from other snakes. Their binding affinities were further determined by competitive ELISA. Animal model studies showed that anti-NNA IgY antibodies exhibited complete protective effects, while a combination of scFv antibodies raised the survival rates and times of mice challenged with lethal doses of NNA venom proteins.


Assuntos
Antivenenos/imunologia , Venenos Elapídicos/imunologia , Naja naja , Anticorpos de Cadeia Única/imunologia , Animais , Galinhas/imunologia , Feminino , Imunoglobulinas/imunologia , Camundongos Endogâmicos ICR , Proteínas de Répteis/imunologia , Mordeduras de Serpentes/diagnóstico , Mordeduras de Serpentes/terapia
7.
Oncotarget ; 7(28): 43629-43653, 2016 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-27248319

RESUMO

Immunogenic cell death (ICD) of tumor cells occurs via various pathways that activate immune cell systems against cancer. Previous studies have demonstrated that shikonin (SK), a plant secondary metabolite, can confer strong pharmacological activities that activate ICD and strong immunogenicity of tumor cells. However, the exact hierarchical regulatory mechanisms including the molecular targets of SK-activated immunogenicity are still unknown. Here, the heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) was revealed to serve as a specific protein target for SK. This binding plays a key role in SK-stimulated ICD activity and the suppression of post-transcriptional mRNA processing, including nuclear export activity of newly synthesized mRNAs in mammary carcinoma cells in vitro. Moreover, it also mechanistically mediates the anti-metastatic effect of a tumor cell lysate (TCL) vaccine, which can be readily generated from SK-treated 4T1 tumor cells (SK-TCL), and the derived tumor-immunogenicity of SK-TCL-treated dendritic cells in vivo. Together, the identification of hnRNPA1 as the intracellular molecular target provides compelling pharmacology-based knowledge for the potential clinical use of SK-induced immunogenicity. In addition, SK may also serve as a potent suppressor that interferes with specific post-transcriptional activities, a mechanism which may be useful for exploitation in cancer therapeutics.


Assuntos
Antineoplásicos/uso terapêutico , Apoptose/imunologia , Neoplasias da Mama/terapia , Ribonucleoproteína Nuclear Heterogênea A1/metabolismo , Naftoquinonas/uso terapêutico , Processamento Pós-Transcricional do RNA/efeitos dos fármacos , Animais , Antineoplásicos/imunologia , Neoplasias da Mama/imunologia , Neoplasias da Mama/patologia , Vacinas Anticâncer/imunologia , Linhagem Celular Tumoral , Células Dendríticas/imunologia , Feminino , Ribonucleoproteína Nuclear Heterogênea A1/imunologia , Humanos , Camundongos , Camundongos Endogâmicos BALB C , Simulação de Acoplamento Molecular , Naftoquinonas/imunologia , RNA Mensageiro/metabolismo , Espectrometria de Massas em Tandem , Ensaios Antitumorais Modelo de Xenoenxerto
8.
Nucleic Acids Res ; 42(22): 13573-87, 2014 Dec 16.
Artigo em Inglês | MEDLINE | ID: mdl-25398907

RESUMO

We have shown that Sp1 phosphorylation at Thr739 decreases its DNA-binding activity. In this study, we found that phosphorylation of Sp1 at Thr739 alone is necessary, but not sufficient for the inhibition of its DNA-binding activity during mitosis. We demonstrated that Pin1 could be recruited to the Thr739(p)-Pro motif of Sp1 to modulate the interaction between phospho-Sp1 and CDK1, thereby facilitating CDK1-mediated phosphorylation of Sp1 at Ser720, Thr723 and Thr737 during mitosis. Loss of the C-terminal end of Sp1 (amino acids 741-785) significantly increased Sp1 phosphorylation, implying that the C-terminus inhibits CDK1-mediated Sp1 phosphorylation. Binding analysis of Sp1 peptides to Pin1 by isothermal titration calorimetry indicated that Pin1 interacts with Thr739(p)-Sp1 peptide but not with Thr739-Sp1 peptide. X-ray crystallography data showed that the Thr739(p)-Sp1 peptide occupies the active site of Pin1. Increased Sp1 phosphorylation by CDK1 during mitosis not only stabilized Sp1 levels by decreasing interaction with ubiquitin E3-ligase RNF4 but also caused Sp1 to move out of the chromosomes completely by decreasing its DNA-binding activity, thereby facilitating cell cycle progression. Thus, Pin1-mediated conformational changes in the C-terminal region of Sp1 are critical for increased CDK1-mediated Sp1 phosphorylation to facilitate cell cycle progression during mitosis.


Assuntos
Proteína Quinase CDC2/metabolismo , Mitose , Peptidilprolil Isomerase/metabolismo , Fator de Transcrição Sp1/metabolismo , Animais , Células Cultivadas , DNA/metabolismo , Células HeLa , Humanos , Camundongos , Mitose/genética , Peptidilprolil Isomerase de Interação com NIMA , Fosforilação , Conformação Proteica , Estabilidade Proteica , Fator de Transcrição Sp1/química
9.
Angew Chem Int Ed Engl ; 53(48): 13054-8, 2014 Nov 24.
Artigo em Inglês | MEDLINE | ID: mdl-25287606

RESUMO

Crown ethers are small, cyclic polyethers that have found wide-spread use in phase-transfer catalysis and, to a certain degree, in protein chemistry. Crown ethers readily bind metallic and organic cations, including positively charged amino acid side chains. We elucidated the crystal structures of several protein-crown ether co-crystals grown in the presence of 18-crown-6. We then employed biophysical methods and molecular dynamics simulations to compare these complexes with the corresponding apoproteins and with similar complexes with ring-shaped low-molecular-weight polyethylene glycols. Our studies show that crown ethers can modify protein surface behavior dramatically by stabilizing either intra- or intermolecular interactions. Consequently, we propose that crown ethers can be used to modulate a wide variety of protein surface behaviors, such as oligomerization, domain-domain interactions, stabilization in organic solvents, and crystallization.


Assuntos
Éteres Cíclicos/química , Modelos Anatômicos , Modelos Moleculares , Simulação de Dinâmica Molecular , Engenharia de Proteínas , Propriedades de Superfície
10.
Acta Crystallogr D Biol Crystallogr ; 70(Pt 2): 231-41, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24531458

RESUMO

Squalene synthase (SQS) is a divalent metal-ion-dependent enzyme that catalyzes the two-step reductive `head-to-head' condensation of two molecules of farnesyl pyrophosphate to form squalene using presqualene diphosphate (PSPP) as an intermediate. In this paper, the structures of human SQS and its mutants in complex with several substrate analogues and intermediates coordinated with Mg2+ or Mn2+ are presented, which stepwise delineate the biosynthetic pathway. Extensive study of the SQS active site has identified several critical residues that are involved in binding reduced nicotinamide dinucleotide phosphate (NADPH). Based on mutagenesis data and a locally closed (JK loop-in) structure observed in the hSQS-(F288L)-PSPP complex, an NADPH-binding model is proposed for SQS. The results identified four major steps (substrate binding, condensation, intermediate formation and translocation) of the ordered sequential mechanisms involved in the `1'-1' isoprenoid biosynthetic pathway. These new findings clarify previous hypotheses based on site-directed mutagenesis and biochemical analysis.


Assuntos
Farnesil-Difosfato Farnesiltransferase/química , Magnésio/química , Manganês/química , NADP/química , Esqualeno/química , Biocatálise , Domínio Catalítico , Cátions Bivalentes , Cristalografia por Raios X , Escherichia coli/genética , Escherichia coli/metabolismo , Farnesil-Difosfato Farnesiltransferase/genética , Expressão Gênica , Humanos , Magnésio/metabolismo , Manganês/metabolismo , Mutagênese Sítio-Dirigida , NADP/metabolismo , Fosfatos de Poli-Isoprenil/metabolismo , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Sesquiterpenos/metabolismo , Esqualeno/metabolismo , Eletricidade Estática
11.
Acta Crystallogr D Biol Crystallogr ; 68(Pt 7): 829-38, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22751668

RESUMO

NkBgl, a ß-glucosidase from Neotermes koshunensis, is a ß-retaining glycosyl hydrolase family 1 enzyme that cleaves ß-glucosidic linkages in disaccharide or glucose-substituted molecules. ß-Glucosidases have been widely used in several applications. For example, mutagenesis of the attacking nucleophile in ß-glucosidase has been conducted to convert it into a glycosynthase for the synthesis of oligosaccharides. Here, several high-resolution structures of wild-type or mutated NkBgl in complex with different ligand molecules are reported. In the wild-type NkBgl structures it was found that glucose-like glucosidase inhibitors bind to the glycone-binding pocket, allowing the buffer molecule HEPES to remain in the aglycone-binding pocket. In the crystal structures of NkBgl E193A, E193S and E193D mutants Glu193 not only acts as the catalytic acid/base but also plays an important role in controlling substrate entry and product release. Furthermore, in crystal structures of the NkBgl E193D mutant it was found that new glucoconjugates were generated by the conjugation of glucose (hydrolyzed product) and HEPES/EPPS/opipramol (buffer components). Based on the wild-type and E193D-mutant structures of NkBgl, the glucosidic bond of cellobiose or salicin was hydrolyzed and a new bond was subsequently formed between glucose and HEPES/EPPS/opipramol to generate new glucopyranosidic products through the transglycosylation reaction in the NkBgl E193D mutant. This finding highlights an innovative way to further improve ß-glucosidases for the enzymatic synthesis of oligosaccharides.


Assuntos
Glicoconjugados/metabolismo , Isópteros/enzimologia , Oligossacarídeos/metabolismo , beta-Glucosidase/química , beta-Glucosidase/metabolismo , Animais , Sítios de Ligação , Cristalografia por Raios X , Glucose/metabolismo , Glicosilação , HEPES/metabolismo , Isópteros/química , Isópteros/genética , Isópteros/metabolismo , Modelos Moleculares , Mutação , Conformação Proteica , beta-Glucosidase/genética
12.
J Biol Chem ; 287(22): 18750-7, 2012 May 25.
Artigo em Inglês | MEDLINE | ID: mdl-22474324

RESUMO

Zaragozic acids (ZAs) belong to a family of fungal metabolites with nanomolar inhibitory activity toward squalene synthase (SQS). The enzyme catalyzes the committed step of sterol synthesis and has attracted attention as a potential target for antilipogenic and antiinfective therapies. Here, we have determined the structure of ZA-A complexed with human SQS. ZA-A binding induces a local conformational change in the substrate binding site, and its C-6 acyl group also extends over to the cofactor binding cavity. In addition, ZA-A effectively inhibits a homologous bacterial enzyme, dehydrosqualene synthase (CrtM), which synthesizes the precursor of staphyloxanthin in Staphylococcus aureus to cope with oxidative stress. Size reduction at Tyr(248) in CrtM further increases the ZA-A binding affinity, and it reveals a similar overall inhibitor binding mode to that of human SQS/ZA-A except for the C-6 acyl group. These structures pave the way for further improving selectivity and development of a new generation of anticholesterolemic and antimicrobial inhibitors.


Assuntos
Compostos Bicíclicos Heterocíclicos com Pontes/metabolismo , Farnesil-Difosfato Farnesiltransferase/metabolismo , Staphylococcus/enzimologia , Ácidos Tricarboxílicos/metabolismo , Farnesil-Difosfato Farnesiltransferase/química , Humanos , Modelos Moleculares
13.
J Struct Biol ; 173(1): 46-56, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-20682343

RESUMO

ß-glucosidases (EC 3.2.1.21) cleave ß-glucosidic linkages in disaccharide or glucose-substituted molecules and play important roles in fundamental biological processes. ß-Glucosidases have been widely used in agricultural, biotechnological, industrial and medical applications. In this study, a high yield expression (70-250 mg/l) in Escherichia coli of the three functional ß-glucosidase genes was obtained from the bacterium Clostridium cellulovorans (CcBglA), the fungus Trichoderma reesei (TrBgl2), and the termite Neotermes koshunensis (NkBgl) with the crystal structures of CcBglA, TrBgl2 and NkBgl, determined at 1.9Å, 1.63Å and 1.34Å resolution, respectively. The overall structures of these enzymes are similar to those belonging to the ß-retaining glycosyl hydrolase family 1, which have a classical (α/ß)(8)-TIM barrel fold. Each contains a slot-like active site cleft and a more variable outer opening, related to its function in processing different lengths of ß-1,4-linked glucose derivatives. The two essential glutamate residues for hydrolysis are spatially conserved in the active site. In both TrBgl2 and NkBgl structures, a Tris molecule was found to bind at the active site, explaining the slight inhibition of hydrolase activity observed in Tris buffer. Manganese ions at 10mM exerted an approximate 2-fold enzyme activity enhancement of all three ß-glucosidases, with CcBglA catalyzing the most efficiently in hydrolysis reaction and tolerating Tris as well as some metal inhibition. In summary, our results for the structural and functional properties of these three ß-glucosidases from various biological sources open important avenues of exploration for further practical applications.


Assuntos
Celulases/química , Clostridium cellulovorans/enzimologia , Isópteros/enzimologia , Modelos Moleculares , Trichoderma/enzimologia , Animais , Catálise , Celulases/genética , Celulases/metabolismo , Clonagem Molecular , Cristalização , Primers do DNA/genética , Concentração de Íons de Hidrogênio , Cinética , Metais/metabolismo , Especificidade da Espécie , Temperatura , Difração de Raios X
14.
Proc Natl Acad Sci U S A ; 107(50): 21337-42, 2010 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-21098670

RESUMO

"Head-to-head" terpene synthases catalyze the first committed steps in sterol and carotenoid biosynthesis: the condensation of two isoprenoid diphosphates to form cyclopropylcarbinyl diphosphates, followed by ring opening. Here, we report the structures of Staphylococcus aureus dehydrosqualene synthase (CrtM) complexed with its reaction intermediate, presqualene diphosphate (PSPP), the dehydrosqualene (DHS) product, as well as a series of inhibitors. The results indicate that, on initial diphosphate loss, the primary carbocation so formed bends down into the interior of the protein to react with C2,3 double bond in the prenyl acceptor to form PSPP, with the lower two-thirds of both PSPP chains occupying essentially the same positions as found in the two farnesyl chains in the substrates. The second-half reaction is then initiated by the PSPP diphosphate returning back to the Mg(2+) cluster for ionization, with the resultant DHS so formed being trapped in a surface pocket. This mechanism is supported by the observation that cationic inhibitors (of interest as antiinfectives) bind with their positive charge located in the same region as the cyclopropyl carbinyl group; that S-thiolo-diphosphates only inhibit when in the allylic site; activity results on 11 mutants show that both DXXXD conserved domains are essential for PSPP ionization; and the observation that head-to-tail isoprenoid synthases as well as terpene cyclases have ionization and alkene-donor sites which spatially overlap those found in CrtM.


Assuntos
Proteínas de Bactérias/antagonistas & inibidores , Proteínas de Bactérias/metabolismo , Farnesil-Difosfato Farnesiltransferase/antagonistas & inibidores , Farnesil-Difosfato Farnesiltransferase/metabolismo , Alquil e Aril Transferases/química , Animais , Catálise , Cátions/química , Humanos , Estrutura Molecular , Fosfatos de Poli-Isoprenil/química , Fosfatos de Poli-Isoprenil/metabolismo , Esqualeno/análogos & derivados , Esqualeno/química , Esqualeno/metabolismo
15.
Acta Crystallogr D Biol Crystallogr ; 66(Pt 2): 145-54, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20124694

RESUMO

The MST family is a subclass of mammalian serine/threonine kinases that are related to the yeast sterile-20 protein and are implicated in regulating cell growth and transformation. The MST3 protein contains a 300-residue catalytic domain and a 130-residue regulatory domain, which can be cleaved by caspase and activated by autophosphorylation, promoting apoptosis. Here, five crystal structures of the catalytic domain of MST3 are presented, including a complex with ADP and manganese, a unique cofactor preferred by the enzyme, and a complex with adenine. Similar to other protein kinases, the catalytic domain of MST3 folds into two lobes: the smaller N lobe forms the nucleotide-binding site and the larger C lobe recognizes the polypeptide substrate. The bound ADP and Mn(2+) ions are covered by a glycine-rich loop and held in place by Asn149 and Asp162. A different orientation was observed for the ligand in the MST3-adenine complex. In the activation loop, the side chain of Thr178 is phosphorylated and is sandwiched by Arg143 and Arg176. Comparison of this structure with other similar kinase structures shows a 180 degrees rotation of the loop, leading to activation of the enzyme. The well defined protein-ligand interactions also provide useful information for the design of potent inhibitors.


Assuntos
Adenina/química , Difosfato de Adenosina/química , Manganês/química , Domínios e Motivos de Interação entre Proteínas , Proteínas Serina-Treonina Quinases/química , Adenina/metabolismo , Difosfato de Adenosina/metabolismo , Trifosfato de Adenosina/química , Trifosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Domínio Catalítico , Sequência Conservada , Cristalografia por Raios X , Humanos , Manganês/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Ligação Proteica , Proteínas Serina-Treonina Quinases/metabolismo , Alinhamento de Sequência , Homologia Estrutural de Proteína
16.
J Med Chem ; 52(13): 3869-80, 2009 Jul 09.
Artigo em Inglês | MEDLINE | ID: mdl-19456099

RESUMO

The gold color of Staphylococcus aureus is derived from the carotenoid staphyloxanthin, a virulence factor for the organism. Here, we report the synthesis and activity of a broad variety of staphyloxanthin biosynthesis inhibitors that inhibit the first committed step in its biosynthesis, condensation of two farnesyl diphosphate (FPP) molecules to dehydrosqualene, catalyzed by the enzyme dehydrosqualene synthase (CrtM). The most active compounds are phosphonoacetamides that have low nanomolar K(i) values for CrtM inhibition and are active in whole bacterial cells and in mice, where they inhibit S. aureus disease progression. We also report the X-ray crystallographic structure of the most active compound, N-3-(3-phenoxyphenyl)propylphosphonoacetamide (IC(50) = 8 nM, in cells), bound to CrtM. The structure exhibits a complex network of hydrogen bonds between the polar headgroup and the protein, while the 3-phenoxyphenyl side chain is located in a hydrophobic pocket previously reported to bind farnesyl thiodiphosphate (FsPP), as well as biphenyl phosphonosulfonate inhibitors. Given the good enzymatic, whole cell, and in vivo pharmacologic activities, these results should help guide the further development of novel antivirulence factor-based therapies for S. aureus infections.


Assuntos
Antibacterianos/química , Compostos Organofosforados/síntese química , Staphylococcus aureus/efeitos dos fármacos , Fatores de Virulência/antagonistas & inibidores , Xantofilas/antagonistas & inibidores , Proteínas de Bactérias/antagonistas & inibidores , Linhagem Celular , Cristalografia por Raios X , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Farnesil-Difosfato Farnesiltransferase/antagonistas & inibidores , Humanos , Concentração Inibidora 50 , Compostos Organofosforados/química , Compostos Organofosforados/farmacologia , Staphylococcus aureus/patogenicidade , Fatores de Virulência/biossíntese , Xantofilas/biossíntese
17.
Science ; 319(5868): 1391-4, 2008 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-18276850

RESUMO

Staphylococcus aureus produces hospital- and community-acquired infections, with methicillin-resistant S. aureus posing a serious public health threat. The golden carotenoid pigment of S. aureus, staphyloxanthin, promotes resistance to reactive oxygen species and host neutrophil-based killing, and early enzymatic steps in staphyloxanthin production resemble those for cholesterol biosynthesis. We determined the crystal structures of S. aureus dehydrosqualene synthase (CrtM) at 1.58 angstrom resolution, finding structural similarity to human squalene synthase (SQS). We screened nine SQS inhibitors and determined the structures of three, bound to CrtM. One, previously tested for cholesterol-lowering activity in humans, blocked staphyloxanthin biosynthesis in vitro (median inhibitory concentration approximately 100 nM), resulting in colorless bacteria with increased susceptibility to killing by human blood and to innate immune clearance in a mouse infection model. This finding represents proof of principle for a virulence factor-based therapy against S. aureus.


Assuntos
Antibacterianos/farmacologia , Proteínas de Bactérias/antagonistas & inibidores , Inibidores Enzimáticos/farmacologia , Farnesil-Difosfato Farnesiltransferase/antagonistas & inibidores , Compostos Organotiofosforados/farmacologia , Infecções Estafilocócicas/tratamento farmacológico , Staphylococcus aureus/patogenicidade , Sequência de Aminoácidos , Animais , Antibacterianos/síntese química , Antibacterianos/química , Antibacterianos/uso terapêutico , Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Linhagem Celular , Proliferação de Células/efeitos dos fármacos , Colesterol/biossíntese , Cristalografia por Raios X , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/metabolismo , Farnesil-Difosfato Farnesiltransferase/química , Farnesil-Difosfato Farnesiltransferase/isolamento & purificação , Farnesil-Difosfato Farnesiltransferase/metabolismo , Humanos , Camundongos , Dados de Sequência Molecular , Compostos Organotiofosforados/síntese química , Compostos Organotiofosforados/metabolismo , Compostos Organotiofosforados/uso terapêutico , Fosfatos de Poli-Isoprenil/química , Fosfatos de Poli-Isoprenil/metabolismo , Estrutura Secundária de Proteína , Sesquiterpenos/química , Sesquiterpenos/metabolismo , Infecções Estafilocócicas/microbiologia , Staphylococcus aureus/efeitos dos fármacos , Staphylococcus aureus/crescimento & desenvolvimento , Staphylococcus aureus/metabolismo , Virulência/efeitos dos fármacos , Xantofilas/biossíntese
18.
Nucleic Acids Res ; 36(5): 1567-77, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18208836

RESUMO

Expression of the gene cluster icaADBC is necessary for biofilm production in Staphylococcus epidermidis. The ica operon is negatively controlled by the repressor IcaR. Here, the crystal structure of IcaR was determined and the refined structure revealed a homodimer comprising entirely alpha-helices, typical of the tetracycline repressor protein family for gene regulations. The N-terminal domain contains a conserved helix-turn-helix DNA-binding motif with some conformational variations, indicating flexibility in this region. The C-terminal domain shows a complementary surface charge distribution about the dyad axis, ideal for efficient and specific dimer formation. The results of the electrophoretic mobility shift assay and isothermal titration calorimetry suggested that a 28 bp core segment of the ica operator is implicated in the cooperative binding of two IcaR dimers on opposite sides of the duplex DNA. Computer modeling based on the known DNA-complex structure of QacR and site-specific mutagenesis experiments showed that direct protein-DNA interactions are mostly conserved, but with slight variations for recognizing the different sequences. By interfering with the binding of IcaR to DNA, aminoglycoside gentamicin and other antibiotics may activate the icaADBC genes and elicit biofilm production in S. epidermidis, and likely S. aureus, as a defense mechanism.


Assuntos
Proteínas de Bactérias/química , Modelos Moleculares , Proteínas Repressoras/química , Staphylococcus epidermidis/genética , Antibacterianos/farmacologia , Proteínas de Bactérias/classificação , Proteínas de Bactérias/genética , Biofilmes , Cristalografia por Raios X , DNA/química , Mutação , Regiões Operadoras Genéticas , Ligação Proteica , Estrutura Terciária de Proteína , Proteínas Repressoras/classificação , Proteínas Repressoras/genética , Staphylococcus epidermidis/fisiologia , Homologia Estrutural de Proteína
19.
Dev Biol ; 285(1): 238-51, 2005 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-16051212

RESUMO

Cell sorting by differential cell adhesion and movement is a fundamental process in multicellular morphogenesis. We have identified a Dictyostelium discoideum gene encoding a novel protein, LrrA, which composes almost entirely leucine-rich repeats (LRRs) including a putative leucine zipper motif. Transcription of lrrA appeared to be developmentally regulated with robust expression during vegetative growth and early development. lrrA null cells generated by homologous recombination aggregated to form loose mounds, but subsequent morphogenesis was blocked without formation of the apical tip. The cells adhered poorly to a substratum and did not form tight cell-cell agglomerates in suspension; in addition, they were unable to polarize and exhibit chemotactic movement in the submerged aggregation and Dunn chamber chemotaxis assays. Fluorescence-conjugated phalloidin staining revealed that both vegetative and aggregation competent lrrA(-) cells contained numerous F-actin-enriched microspikes around the periphery of cells. Quantitative analysis of the fluorescence-stained F-actin showed that lrrA(-) cells exhibited a dramatically increase in F-actin as compared to the wild-type cells. When developed together with wild-type cells, lrrA(-) cells were unable to move to the apical tip and sorted preferentially to the rear and lower cup regions. These results indicate that LrrA involves in cytoskeleton remodeling, which is needed for normal chemotactic aggregation and efficient cell sorting during multicellular morphogenesis, particularly in the formation of apical tip.


Assuntos
Proteínas do Citoesqueleto/metabolismo , Dictyostelium/crescimento & desenvolvimento , Dictyostelium/metabolismo , Proteínas de Protozoários/metabolismo , Actinas/genética , Actinas/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Animais , Adesão Celular , Quimiotaxia , Proteínas do Citoesqueleto/química , Proteínas do Citoesqueleto/genética , Dictyostelium/citologia , Dictyostelium/genética , Regulação da Expressão Gênica no Desenvolvimento , Marcação de Genes , Genes de Protozoários , Dados de Sequência Molecular , Proteínas de Protozoários/química , Proteínas de Protozoários/genética , Homologia de Sequência de Aminoácidos
20.
Mol Microbiol ; 53(1): 81-91, 2004 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-15225305

RESUMO

Non-mitochondrial citrate synthase catalyses citrate synthesis in the glyoxylate cycle in gluconeogenesis. Screening Dictyostelium discoideum mutants generated by insertional mutagenesis isolated a poor-growing mutant that displayed aberrant developmental morphology on bacterial lawns. Axenically grown mutants developed normally and formed mature fruiting bodies on buffered agar. The affected locus encoded a novel protein (CshA) that was homologous to glyoxysomal citrate synthase. cshA was expressed maximally during vegetative growth and gradually decreased through subsequent developmental stages. An in vitro citrate synthase assay revealed that cshA disruption resulted in a 50% reduction in enzyme activity, implicating CshA as an active citrate synthase. The amino-terminus of CshA was found to have an atypical mitochondrial targeting signal, instead containing a unique nonapeptide sequence (RINILANHL) that was homologous to the conserved peroxisomal targeting signal 2 (PTS2). CshA protein was shown to be localized in the peroxisomes, and the RINILANHL sequence only efficiently targeted the peroxisomal green fluorescent protein. The growth defect of cshA(-) cells was associated with the impairment of phagocytosis and fluid-phase endocytosis, independent from cytokinesis. Disrupted multicellular development on bacterial lawns resulted from the abnormal susceptibility to the environmental conditions, perhaps because of citrate insufficiency. Taken together, these results provide new insights into the function of peroxisomal citrate synthase in cell growth and multicellular development.


Assuntos
Citrato (si)-Sintase/fisiologia , Dictyostelium/crescimento & desenvolvimento , Peroxissomos/fisiologia , Transdução de Sinais , Sequência de Aminoácidos , Animais , Compartimento Celular , Diferenciação Celular , Divisão Celular/genética , Citrato (si)-Sintase/genética , Dictyostelium/citologia , Dictyostelium/enzimologia , Mitocôndrias/enzimologia , Dados de Sequência Molecular
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